AammarTufail/top_five_ai_agents_for_research ? reverse-engineered prompt

Build me a complete “AI Research OS” for researchers and PhD students, with five separate AI assistants that work as a full research workflow.

I want one agent that helps discover papers, research gaps, and PhD ideas, one that can do a literature review from search to screening to extracting findings and writing it up, one for helping design experiments and analyze results, one for academic writing and publication support like drafting manuscripts, matching journals, and simulating reviewer feedback, and one acting like a PhD supervisor that gives roadmaps, weekly progress checks, critical feedback, and presentation help.

Please keep each agent self contained so it can be used on its own, and also include a simple shared learning area, a guide for each agent, and a polished book version that explains the whole system in a clean website style with PDF and EPUB output. If you need to check current docs or best practices for the tools, go look them up online.