crazyhottommy/ChIP-seq-analysis ? reverse-engineered prompt

Build me a clean little documentation site for these ChIP seq analysis notes, so someone can easily read through the workflow from quality control and mapping, to peak calling, count tables, and differential binding.

I want it to feel like a practical study guide, with a simple homepage, a clear table of contents, and easy navigation between the sections. Include the markdown content for each chapter, make the images show up properly, and keep the layout readable on desktop and mobile. If it makes sense, add a sidebar or top nav that follows the parts in order, plus a way to jump to the Snakemake pipeline and UCSC browser notes.

Please keep the style simple and scientific, not flashy. Make sure the site is easy to deploy as a static page, and use the existing markdown files as the source of truth. If you need to look up current docs online for the best setup, go ahead.