foryourhealth111-pixel/research-innovation-explorer ? reverse-engineered prompt

Build me a Python tool for research idea discovery that starts from a small set of high quality papers and helps me turn them into a ranked list of possible research directions.

I want it to generate search queries, organize a paper pool, and build a pairwise idea matrix so every paper can be compared against every other paper. Then it should help me review the strongest combinations, record evidence and uncertainty, and produce a clear shortlist of promising, weak, parked, or excluded ideas.

Please also include simple templates for the paper pool, search log, and candidate review, plus scripts that can make a markdown report and a few static figures like heatmaps or summary charts. Keep the output readable for a researcher, with citations, notes, and next checks clearly separated from raw guesses.

Make it work from the command line, keep it host neutral, and use current docs online if anything needs to be checked.