mbassalbioinformatics/ChIP-AP ? reverse-engineered prompt

Build me a simple Python based ChIP seq analysis app that helps a user go from raw reads or BAM files to a final peak report without needing to write code.

It should handle multiple samples and replicates, run the usual cleanup and quality checks, do alignment if the input is FASTQ, call peaks with more than one caller, then merge the results so the user can compare consensus peaks with the full combined set. I want the output to include peak locations plus useful annotation like nearby gene names, IDs, functions, GO terms, and pathway links.

Make it easy for non experts to run, with a clear wizard or dashboard style interface and a straightforward install flow for local use on common desktop systems. If you need to check current docs for any of the bioinformatics tools, look them up online.